OntoMerger Documentation¶

OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes, (i.e. ontology concepts) that represent the same domain, e.g. diseases, and connecting them to form a single directed acyclic hierarchical graph (DAG) (i.e. an ontology class hierarchy). The library implements a pipeline that takes nodes, mappings and (disconnected) hierarchies as input and produces node merges and a connected hierarchy. It also provides analysis and data testing for fine tuning the inputs in order to further reduce duplication, as well as to increase connectivity.

>@article{ontomerger,
          arxivId = {???},
          author = {Geleta, David and Rozemberczki, Benedek
                   and Nikolov, Andriy and O'Donoghue, Mark
                   and Gogleva, Anna and Tamma, Valentina},
          month = {may},
          title = {{OntoMerger: An Ontology Alignment Library for
                    Creating Minimal and Connected Domain Knowledge
                    Sub-graphs.}},
          url = {http://arxiv.org/abs/???},
          year = {2022}
}

Package Reference