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Notes

  • Installation
  • Introduction
  • Overview
    • Motivation
      • Knowledge fragmentation
      • Node duplication
      • Data set version discrepancies
      • Disconnected nodes
    • Method
  • Project structure and data
    • Project folder organisation
    • Data schema
      • Node ID schema
    • Input data
      • Table nodes.csv
      • Table nodes_obsolete.csv
      • Table edges_hierarchy.csv
      • Table mappings.csv
    • Output Data
      • Folders
      • Table edges_hierarchy.csv
      • Table mappings.csv
      • Table merges.csv
      • Table nodes.csv
  • Alignment configuration
    • Specification
    • Example
  • Pipeline
    • Run
    • Steps
  • Alignment
    • Steps
      • Establishing source alignment order
      • Pre-processing mappings
      • Aligning sources for mapping type groups
      • Aligning nodes to a source
  • Connectivity
    • Connection via mapped parent
    • Steps
      • Seed ontology hierarchy
      • Other full hierarchies
      • Connecting dangling nodes
  • Analysis
    • Alignment process report
    • Pandas profiling
    • Data tests
  • Data testing
  • External resources
    • Related Software
    • Related Publications
    • Supporting Software

Package Reference

  • Root
    • Root
  • OntoMerger
    • Pipeline
    • Classes
      • Pipeline
        • Pipeline
    • Class Inheritance Diagram
onto-merger
  • Index
  • Edit on GitHub

Index

M | O | P | R

M

  • module
    • onto_merger
    • onto_merger.pipeline

O

  • onto_merger
    • module
  • onto_merger.pipeline
    • module

P

  • Pipeline (class in onto_merger.pipeline)

R

  • run_alignment_and_connection_process() (Pipeline method)

© Copyright 2023, David Geleta. Revision 67db652c.

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